B
L
Dr. Bono Lučić
NMR Center
Bijenička c. 54
HR-10000 Zagreb
Croatia
Education
Ph.D.: 1997, Chemistry, Theoretical and physical chemistry, Faculty of Science, University of Zagreb, Croatia
M.Sc.: 1994, Physics, Molecular biophysics, Faculty of Science, University of Zagreb, Croatia
B.Sc.: 1989, Electronics, Faculty of Electrical Engineering and Computing, University of Zagreb, Croatia
Secondary School: 1983, Gymnasium, Gradačac, Bosnia and Herzegovina
Projects
Development and application of improved chemoinformatics methods in the biosciences, CRO-GER project (DAAD) (2021-2022), project leader from the Croatian side
Bioprospecting of Adriatic See, Croatian Government and the European Union through the European Regional Development Fund - the Competitiveness and Cohesion Operational Programme (KK.01.1.1.01) – The Scientific Centre of Excellence for Marine Bioprospecting -BioProCro granted to Rozelinda Čož-Rakovac, (2017-), associate/researcher
Investigation of chemism and antioxidant activity of complexes of polyphenols with essential metals, CRO-SRB project (2016-2017), Ministry of Science Education and Sports of the Republic of Croatia, researcher from the Croatian side
Developing methods for modeling properties of bioactive molecules and proteins (2012-2014), project leader, Ministry of Science, Education and Sports of the Republic of Croatia
Investigation of relationships between structure and biological activity of polyphenols, CRO-SRB project (2011-2012), project leader from the Croatian side, Ministry of Science Education and Sports of the Republic of Croatia
Developing methods for modeling properties of bioactive molecules and proteins (2007-2011), associate/researcher, Ministry of Science Education and Sports of the Republic of Croatia, researcher
Development and application of models in chemistry and bioinformatics (2002-2006), associate/researcher, Ministry of Science Education and Sports of the Republic of Croatia
Toxicity and carcinogenicity of organic molecules on living organisms in the environment, HR-SLO project (2001-2003), project leader from the Croatian side, Ministry of Science Education and Sports of the Republic of Croatia
IQ QSAR program (2001-2004), project co-leader, PLIVA, Zagreb
Predicting structure of proteins and bio-active molecules (1998-2001), project leader, Ministry of Science Education and Sports of the Republic of Croatia
Development and application of models in chemistry (1996-2002), associate/researcher, Ministry of Science Education and Sports of the Republic of Croatia
Development and application of models in chemistry (1992-1996), associate/researcher, Ministry of Science Education and Sports of the Republic of Croatia
Predicting structure and activity of membrane polypeptides (1991-1992), associate/researcher, Ministry of Science Education and Sports of the Republic of Croatia
Awards and Achievements
2022, Associate Professor (honorary position) at the J. J. Strossmayer University in Osijek, Osijek, Croatia
Classes
Structural bioinformatics of proteins and bioactive molecules, PhD Study of Molecular Biosciences (2008-) (organized by: University of Osijek, Ruđer Bošković Institute and University of Dubrovnik)
Models and methods in structural bioinformatics, PhD Study of Biophysics (2009-) (organized by: University of Split, Ruđer Bošković Institute (Zagreb), Institute of Physics (Zagreb), and Mediterranean Institute for Life Sciences (Split))
Member of the Council of PhD study Biophysics (2009-2018), University of Split, Croatia
Mentorships
Two PhD Dissertations - at the University of Zagreb, Croatia (in theoretical chemistry) and at the University of Split, Croatia (in biophysics)
One M.Sc. Thesis at the University of Zagreb, Croatia (technical sciences)
Three B.Sc. Thesis at the University of Zagreb, Croatia - at the Faculty of Science (one in physics/biophysics and another one in chemistry) and at the Faculty of Pharmacy and Biochemistry (in pharmacy)
Featured Publications
Lovrić, Mario; Malev, Olga; Klobučar, Goran; Kern, Roman; Liu, Jay; Lučić, Bono, Predictive Capability of QSAR Models Based on the CompTox Zebrafish Embryo Assays: An Imbalanced Classification Problem. // Molecules, 26 (2021), 6; 1617, 15 doi:10.3390/molecules26061617
Cichońska, Anna; Ravikumar, Balaguru; Allaway, Robert J.; Wan, Fangping; Park, Sungjoon; Isayev, Olexandr; Li, Shuya; Mason, Michael; Lamb, Andrew; Tanoli, Ziaurrehman et al., Crowdsourced mapping of unexplored target space of kinase inhibitors. // Nature communications, 12 (2021), 3307, 18 doi:10.1038/s41467-021-23165-1
Lovrić, Mario; Pavlović, Kristina; Žuvela, Petar; Spataru, Adrian; Lučić, Bono; Kern, Roman; Wong, Ming Wah, Machine learning in prediction of intrinsic aqueous solubility of drug‐like compounds: Generalization, complexity, or predictive ability?. // Journal of chemometrics, 35 (2021), 7-8; e3349, 16 doi:10.1002/cem.3349
Lučić, Bono; Batista, Jadranko; Bojović, Viktor; Lovrić, Mario; Sović Kržić, Ana; Bešlo, Drago; Nadramija, Damir; Vikić-Topić, Dražen, Estimation of Random Accuracy and its Use in Validation of Predictive Quality of Classification Models within Predictive Challenges // Croatica Chemica Acta, 92 (2019), 3; 226865, 13 doi:10.5562/cca3551
Amić, Ana; Marković, Zoran; Dimitrić Marković, Jasmina M., Milenković, Dejan; Lučić, Bono, The role of guaiacyl moiety in free radical scavenging by 3, 5-dihydroxy-4-methoxybenzyl alcohol: Thermodynamics of 3H+/3e- mechanisms // Molecular physics, 117 (2019), 2; 207-217 doi:10.1080/00268976.2018.1508777
Amić, Ana; Lučić, Bono; Stepanić, Višnja; Marković, Zoran; Marković, Svetlana; Dimitrić Marković, Jasmina; Amić, Dragan, Free radical scavenging potency of quercetin catecholic colonic metabolites: thermodynamics of 2H+/2e- processes // Food chemistry, 218 (2017), 144-151 doi:10.1016/j.foodchem.2016.09.018
Batista, Jadranko; Vikić-Topić, Dražen; Lučić, Bono, The difference between the accuracy of real and the corresponding random model is a useful parameter for validation of two-state classification model quality // Croatica chemica acta, 89 (2016), 4; 527-534 doi:10.5562/cca3117
Filipović, Miloš; Marković, Zoran; Đorović, Jelena; Dimitrić Marković, Jasmina; Lučić, Bono; Amić, Dragan, QSAR of the free radical scavenging potency of selected hydroxybenzoic acids and simple phenolics // Comptes rendus. Chimie, 18 (2015), 5; 492-498 doi:10.1016/j.crci.2014.09.001
Amić, Ana; Marković, Zoran; Dimitrić Marković, Jasmina; Stepanić, Višnja; Lučić, Bono; Amić, Dragan, Towards an improved prediction of the free radical scavenging potency of flavonoids: The significance of double PCET mechanisms // Food chemistry, 152 (2014), 578-585 doi:10.1016/j.foodchem.2013.12.025
Lučić, Bono; Stepanić, Višnja; Plavšić, Dejan; Amić, Ana; Amić, Dragan, Correlation between 13C NMR chemical shifts and antiradical activity of flavonoids // Monatshefte für Chemie, 145 (2014), 3; 457-463 doi:10.1007/s00706-013-1130-4
Stepanić, Višnja; Gall Trošelj, Koraljka; Lučić, Bono; Marković, Zoran; Amić, Dragan, Bond dissociation free energy as a general parameter for flavonoid radical scavenging activity // Food chemistry, 141 (2013), 2; 1562-1570 doi:10.1016/j.foodchem.2013.03.072,
Tanabe, Kazutoshi; Kurita, Takio; Nishida, Kenji; Lučić, Bono; Amić, Dragan; Suzuki, Takahiro, Improvement of carcinogenicity prediction performances based on sensitivity analysis in variable selection of SVM models // SAR and QSAR in environmental research, 24 (2013), 7; 565-580
Lučić, Bono; Sović, Ivan; Batista, Jadranko; Skala, Karolj; Plavšić, Dejan; Vikić-Topić, Dražen; Bešlo, Drago; Nikolić, Sonja; Trinajstić, Nenad, The Sum-Connectivity Index - An Additive Variant of the Randić Connectivity Index // Current computer-aided drug design, 9 (2013), 2; 184-194 doi:10.2174/1573409911309020004
Marković, Zoran; Milenković, Dejan; Đorović, Jelena; Dimitrić Marković, Jasmina; Stepanić, Višnja; Lučić, Bono; Amić, Dragan, PM6 and DFT study of free radical scavenging activity of morin // Food chemistry, 134 (2012), 4; 1754-1760 doi:10.1016/j.foodchem.2012.03.124
Tanabe, Kazutoshi; Lučić, Bono; Amić, Dragan; Kurita, Takio; Kaihara, Mikio; Onodera, Natsuo; Suzuki, Takahiro, Prediction of carcinogenicity for diverse chemicals based on substructure grouping and SVM modeling // Molecular diversity, 14 (2010), 4; 789-802 doi:10.1007/s11030-010-9232-y
Amić, Dragan; Lučić, Bono, Reliability of bond dissociation enthalpy calculated by the PM6 method and experimental TEAC values in antiradical QSAR of flavonoids // Bioorganic & medicinal chemistry, 18 (2010), 1; 28-35 doi:10.1016/j.bmc.2009.11.015
Lučić, Bono; Trinajstić, Nenad; Zhou, Bo, Comparison between the sum-connectivity index and product-connectivity index for benzenoid hydrocarbons // Chemical physics letters, 475 (2009), 1-3; 146-148 doi:10.1016/j.cplett.2009.05.022
Amić, Dragan; Davidović-Amić, Dušanka; Bešlo, Drago; Rastija, Vesna; Lučić, Bono; Trinajstić, Nenad, SAR and QSAR of the Antioxidant Activity of Flavonoids // Current Medicinal Chemistry, 14 (2007), 7; 827-845
Piližota, Teuta; Lučić, Bono; Trinajstić, Nenad, Use of variable selection in modeling the secondary structural content of proteins from their composition of amino acid residues // Journal of Chemical Information and Computer Sciences, 44 (2004), 1; 113-121
Lučić, Bono; Nadramija, Damir; Bašic, Ivan; Trinajstić, Nenad, Toward generating simpler QSAR models: Nonlinear multivariate regression versus several neural network ensembles and some related methods // Journal of chemical information and computer sciences, 43 (2003), 4; 1094-1102
Lučić, Bono; Amić, Dragan; Trinajstić, Nenad, Nonlinear Multivariate Regression Outperforms Several Concisely Designed Neural Networks on Three QSPR Data Sets // Journal of Chemical Information and Computer Sciences, 40 (2000), 2; 403-413
Lučić, Bono; Trinajstić, Nenad; Sild, S.; Karelson, M.; Katritzky, A.R. A new efficient approach for variable selection based on multiregression : prediction of gas chromatographic retention time and response factors // Journal of chemical information and computer sciences, 39 (1999), 3; 610-621
Lučić, Bono; Trinajstić, Nenad, Multivariate regression outperforms several robust architectures of neural networks in QSAR modeling // Journal of chemical information and computer sciences, 39 (1999), 1; 121-132 doi:10.1021/ci980090f
Juretić, Davor; Zucić, Damir; Lučić, Bono; Trinajstić, Nenad, Preference Functions for Prediction of Membrane-buried Helices in Integral Membrane Proteins // Computers & chemistry, 22 (1998), 4; 279-294
Lučić, Bono; Nikolić, Sonja; Trinajstić, Nenad; Juretić, Davor, The Structure-Property Models Can Be Improved Using the Orthogonalized Descriptors // Journal of chemical information and computer sciences, 35 (1995), 532-538 doi:10.1021/ci00025a022
Publications - editorial books
Zbornik radova s konferencije
4. znanstveni sastanak hrvatskih biofizičara : zbornik radova / Svetličić, Vesna ; Lučić, Bono ; Hozić-Zimmermann, Amela (ur.). Zagreb: Institut Ruđer Bošković, 2005
Publications - journal articles
Izvorni znanstveni rad
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Vujica, Lana; Lončar, Jovica; Mišić, Lana; Lučić, Bono; Radman, Katarina; Mihaljević, Ivan; Bertoša, Branimir; Mesarić, Josip; Horvat, Marina; Smital, Tvrtko | Environmental contaminants modulate transport activity of zebrafish (Danio rerio) multidrug and toxin extrusion protein 3 (Mate3/Slc47a2.1) // Science of the total environment, 901 (2023), doi: 10.1016/j.scitotenv.2023.165956
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Daghighi, Amirreza ; Casanola-Martin, Gerardo M. ; Timmerman, Troy ; Milenković, Dejan ; Lučić, Bono ; Rasulev, Bakhtiyor | In Silico Prediction of the Toxicity of Nitroaromatic Compounds: Application of Ensemble Learning QSAR Approach // Toxics, 10 (2022), 12; 746, 14. doi: 10.3390/toxics10120746
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Bešlo, Drago ; Došlić, Gloria ; Agić, Dejan ; Rastija, Vesna ; Šperanda, Marcela ; Gantner, Vesna ; Lučić, Bono | Polyphenols in ruminant nutrition and their effects on reproduction // Antioxidants, 11 (2022), 5; 970, 22. doi: 10.3390/antiox11050970
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Bešlo, Drago; Bešlo, Klara; Agić, Dejan; Vikić-Topić, Dražen; Lučić, Bono | Variations of Total Phenolic Content in Honey Samples Caused by Different Calibration Lines // Croatica chemica acta, 93 (2020), 4; 367-375. doi: 10.5562/cca3805
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Cichońska, Anna ; Ravikumar, Balaguru ; Allaway, Robert J. ; Wan, Fangping ; Park, Sungjoon ; Isayev, Olexandr ; Li, Shuya ; Mason, Michael ; Lamb, Andrew ; Tanoli, Ziaurrehman et al. | Crowdsourced mapping of unexplored target space of kinase inhibitors // Nature communications, 12 (2021), 3307, 18. doi: 10.1038/s41467-021-23165-1
doiwww.nature.comdoi.orgfulir.irb.hr -
Lovrić, Mario ; Pavlović, Kristina ; Žuvela, Petar ; Spataru, Adrian ; Lučić, Bono ; Kern, Roman ; Wong, Ming Wah | Machine learning in prediction of intrinsic aqueous solubility of drug‐like compounds: Generalization, complexity, or predictive ability? // Journal of chemometrics, 35 (2021), 7-8; e3349, 16. doi: 10.1002/cem.3349
doianalyticalsciencejournals.onlinelibrary.wiley.comdoi.orgfulir.irb.hr -
Lovrić, Mario ; Malev, Olga ; Klobučar, Goran ; Kern, Roman ; Liu, Jay ; Lučić, Bono | Predictive Capability of QSAR Models Based on the CompTox Zebrafish Embryo Assays: An Imbalanced Classification Problem // Molecules, 26 (2021), 6; 1617, 15. doi: 10.3390/molecules26061617
doiwww.mdpi.comdoi.orgfulir.irb.hr -
Lučić, Bono ; Batista, Jadranko ; Bojović, Viktor ; Lovrić, Mario ; Sović Kržić, Ana ; Bešlo, Drago ; Nadramija, Damir ; Vikić-Topić, Dražen | Estimation of random accuracy and its use in validation of predictive quality of classification models within predictive challenges // Croatica chemica acta, 92 (2019), 3; 379-391. doi: 10.5562/cca3551
doihrcak.srce.hrdoi.orgfulir.irb.hr -
Stepanić, Višnja ; Matić, Sara ; Amić, Ana ; Lučić, Bono ; Milenković , Dejan ; Marković, Zoran | Effects of conjugation metabolism on radical scavenging and transport properties of quercetin – In silico study // Journal of molecular graphics & modelling, 86 (2019), 278-285. doi: 10.1016/j.jmgm.2018.10.023
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Matić, Sara ; Jadrijević-Mladar Takač, Milena ; Barbarić, Monika ; Lučić, Bono ; Gall Trošelj, Koraljka ; Stepanić, Višnja | he Influence of In Vivo Metabolic Modifications on ADMET Properties of Green Tea Catechins-In Silico Analysis // Journal of pharmaceutical sciences, 107 (2018), 11; 2957-2964. doi: 10.1016/j.xphs.2018.07.026
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Amić, Ana ; Marković, Zoran ; Dimitrić Marković, Jasmina M. ; Milenković, Dejan ; Lučić, Bono | The role of guaiacyl moiety in free radical scavenging by 3, 5-dihydroxy-4-methoxybenzyl alcohol: Thermodynamics of 3H+/3e- mechanisms // Molecular physics, 117 (2019), 2; 207-217. doi: 10.1080/00268976.2018.1506174
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Amić, Ana ; Lučić, Bono ; Marković, Zoran ; Amić, Dragan | Carboxyl Group as a Radical Scavenging Moiety: Thermodynamics of 2H+/2e– Processes of Phloretic Acid // Croatica chemica acta, 89 (2016), 4; 517-525. doi: 10.5562/cca3024
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Batista, Jadranko ; Vikić-Topić, Dražen ; Lučić, Bono | The difference between the accuracy of real and the corresponding random model is a useful parameter for validation of two-state classification model quality // Croatica chemica acta, 89 (2016), 4; 527-534. doi: 10.5562/cca3117
doihrcak.srce.hrdoi.orgfulir.irb.hr -
Amić, Ana ; Lučić, Bono ; Stepanić, Višnja ; Marković, Zoran ; Marković, Svetlana ; Dimitrić Marković, Jasmina ; Amić, Dragan | Free radical scavenging potency of quercetin catecholic colonic metabolites: thermodynamics of 2H+/2e- processes // Food chemistry, 218 (2017), 144-151. doi: 10.1016/j.foodchem.2016.09.018
doiwww.sciencedirect.com -
Amić, Ana ; Marković, Zoran ; Dimitrić Marković, Jasmina ; Jeremić, Svetlana ; Lučić, Bono ; Amić, Dragan | Free radical scavenging and COX-2 inhibition by simple colon metabolites of polyphenols: A theoretical approach // Computational biology and chemistry, 65 (2016), 45-53. doi: 10.1016/j.compbiolchem.2016.09.013
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Amić, Ana ; Marković, Zoran ; Dimitrić Marković, Jasmina ; Lučić, Bono ; Stepanić, Višnja ; Amić, Dragan | The 2H+/2e− free radical scavenging mechanisms of uric acid: thermodynamics of N-H bond cleavage // Computational and theoretical chemistry, 1077 (2016), 2-10. doi: 10.1016/j.comptc.2015.09.003
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Amić, Dragan ; Davidović-Amić, Dušanka ; Bešlo, Drago ; Lučić, Bono ; Trinajstić, Nenad | Structure-activity correlation of flavone derivatives for inhibition of cAMP phosphodiesterase // Journal of chemical information and computer sciences, 35 (1995), 6; 1034-1038. doi: 10.1021/ci00028a013
doipubs.acs.orgdoi.org -
Juretić, Davor ; Lučić, Bono ; Trinajstić, Nenad | Secondary Structure Prediction Quality for Naturally Occurring Amino Acids in Soluble Proteins // Journal of molecular structure. Theochem, 338 (1995), 43-50. doi: 10.1016/0166-1280(94)04047-V
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Lučić, Bono ; Nikolić, Sonja ; Trinajstić, Nenad ; Juretić, Davor | The Structure-Property Models Can Be Improved Using the Orthogonalized Descriptors // Journal of chemical information and computer sciences, 35 (1995), 532-538. doi: 10.1021/ci00025a022
doipubs.acs.org -
Juretić, Davor ; Trinajstić, Nenad ; Lučić, Bono | Protein Secondary Structure Conformations and Associated Hydrophobicity Scale // Journal of mathematical chemistry, 14 (1993), 1; 35-45. doi: 10.1007/BF01164453
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Juretić, Davor ; Lučić, Bono ; Trinajstić, Nenad | Predicting Membrane Protein Secondary Structure: Preference Functions Method for Finding Optimal Conformational Parameters // Croatica chemica acta, 66 (1993), 2; 201-208
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Lučić, Bono ; Nikolić, Sonja ; Trinajstić, Nenad ; Juretić, Davor ; Jurić, Albin | Novel QSPR Approach to Physicochemical Properties of the Alpha-Amino-Acids // Croatica chemica acta, 68 (1995), 3; 435-450
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Lučić, Bono ; Nikolić, Sonja ; Trinajstić, Nenad ; Jurić, Albin ; Mihalić, Zlatko | A Structure-Property Study of the Solubility of Aliphatic-Alcohols in Water // Croatica chemica acta, 68 (1995), 3; 417-434
hrcak.srce.hr Amić, Dragan ; Lučić, Bono ; Amić, Ana ; Marković, Zoran | On the Novel ETE2 and BDE2 Molecular Descriptors of Flavonoid Free Radical Scavenging Potency // International journal of chemical modeling, 6 (2014), 2-3; 287-299
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Filipović, Miloš ; Marković, Zoran ; Đorović, Jelena ; Dimitrić Marković, Jasmina ; Lučić, Bono ; Amić, Dragan | QSAR of the free radical scavenging potency of selected hydroxybenzoic acids and simple phenolics // Comptes rendus. Chimie, 18 (2015), 5; 492-498. doi: 10.1016/j.crci.2014.09.001
doiwww.sciencedirect.com -
Dimitrić Marković, Jasmina ; Amić, Dragan ; Lučić, Bono ; Marković, Zoran | Oxidation of kaempferol and its iron(III) complex by DPPH radical: spectroscopic and theoretical study // Monatshefte für Chemie, 145 (2014), 4; 557-563. doi: 10.1007/s00706-013-1135-z
doilink.springer.comdoi.org -
Lučić, Bono ; Stepanić, Višnja ; Plavšić, Dejan ; Amić, Ana ; Amić, Dragan | Correlation between 13C NMR chemical shifts and antiradical activity of flavonoids // Monatshefte für Chemie, 145 (2014), 3; 457-463. doi: 10.1007/s00706-013-1130-4
doilink.springer.comdoi.org -
Amić, Ana ; Marković, Zoran ; Dimitrić Marković, Jasmina ; Stepanić, Višnja ; Lučić, Bono ; Amić, Dragan | Towards an improved prediction of the free radical scavenging potency of flavonoids: The significance of double PCET mechanisms // Food chemistry, 152 (2014), 578-585. doi: 10.1016/j.foodchem.2013.12.025
doidoi.orgwww.sciencedirect.com -
Lučić, Bono ; Sović, Ivan ; Bešlo, Drago ; Plavšić, Dejan ; Vikić-Topić, Dražen ; Trinajstić, Nenad. | On the Novel Balaban-like and Balaban-Detour-like Molecular Descriptors // International journal of chemical modeling, 5 (2013), 2/3; 277-294
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Stepanić, Višnja ; Gall Trošelj, Koraljka ; Lučić, Bono ; Marković, Zoran ; Amić, Dragan | Bond dissociation free energy as a general parameter for flavonoid radical scavenging activity // Food chemistry, 141 (2013), 2; 1562-1570. doi: 10.1016/j.foodchem.2013.03.072
doiwww.sciencedirect.comac.els-cdn.comdx.doi.org -
Amić, Dragan ; Stepanić, Višnja ; Lučić, Bono ; Marković, Zoran ; Dimitrić Marković, Jasmina | PM6 study of free radical scavenging mechanisms of flavonoids: why does O–H bond dissociation enthalpy effectively represent free radical scavenging activity? // Journal of molecular modeling, 19 (2013), 6; 2593-2603. doi: 10.1007/s00894-013-1800-5
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Marković, Zoran ; Milenković, Dejan ; Đorović, Jelena ; Dimitrić Marković, Jasmina ; Lučić, Bono ; Amić, Dragan | A DFT and PM6 study of free radical scavenging activity of ellagic acid // Monatshefte für Chemie, 144 (2013), 6; 803-812. doi: 10.1007/s00706-013-0949-z
doilink.springer.comdoi.org Tanabe, Kazutoshi ; Kurita, Takio ; Nishida, Kenji ; Lučić, Bono ; Amić, Dragan ; Suzuki, Takahiro | Improvement of carcinogenicity prediction performances based on sensitivity analysis in variable selection of SVM models // SAR and QSAR in environmental research, 24 (2013), 7; 565-580
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Dimitrić Marković, Jasmina ; Marković, Zoran ; Krstić, Jugoslav ; Milenković, Dejan ; Lučić, Bono ; Amić, Dragan | Interpretation of the IR and Raman spectra of morin by density functional theory and comparative analysis // Vibrational spectroscopy, 64 (2013), 1-9. doi: 10.1016/j.vibspec.2012.10.006
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Marković, Zoran ; Milenković, Dejan ; Đorović, Jelena ; Dimitrić Marković, Jasmina ; Stepanić, Višnja ; Lučić, Bono ; Amić, Dragan | Free radical scavenging activity of morin 2’-O− phenoxide anion // Food chemistry, 135 (2012), 3; 2070-2077. doi: 10.1016/j.foodchem.2012.05.119
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Lučić, Bono ; Sović, Ivan ; Batista, Jadranko ; Skala, Karolj ; Plavšić, Dejan ; Vikić-Topić, Dražen ; Bešlo, Drago ; Nikolić, Sonja ; Trinajstić, Nenad | The Sum-Connectivity Index - An Additive Variant of the Randić Connectivity Index // Current computer-aided drug design, 9 (2013), 2; 184-194. doi: 10.2174/1573409911309020004
doieurekaselect.com -
Marković, Zoran ; Milenković, Dejan ; Đorović, Jelena ; Dimitrić Marković, Jasmina ; Stepanić, Višnja ; Lučić, Bono ; Amić, Dragan | PM6 and DFT study of free radical scavenging activity of morin // Food chemistry, 134 (2012), 4; 1754-1760. doi: 10.1016/j.foodchem.2012.03.124
doidx.doi.orgwww.sciencedirect.com -
Vukičević, Damir ; Trinajstić, Nenad ; Nikolić, Sonja ; Lučić, Bono ; Zhou, Bo | Master connectivity index and master connectivity polynomial // Current computer-aided drug design, 6 (2010), 4; 235-239. doi: 10.2174/1573409911006040235
doiwww.eurekaselect.com -
Tanabe, Kazutoshi ; Lučić, Bono ; Amić, Dragan ; Kurita, Takio ; Kaihara, Mikio ; Onodera, Natsuo ; Suzuki, Takahiro | Prediction of carcinogenicity for diverse chemicals based on substructure grouping and SVM modeling // Molecular diversity, 14 (2010), 4; 789-802. doi: 10.1007/s11030-010-9232-y
doilink.springer.comdoi.org -
Amić, Dragan ; Lučić, Bono | Reliability of bond dissociation enthalpy calculated by the PM6 method and experimental TEAC values in antiradical QSAR of flavonoids // Bioorganic & medicinal chemistry, 18 (2010), 1; 28-35. doi: 10.1016/j.bmc.2009.11.015
doiwww.sciencedirect.comdoi.org -
Lučić, Bono ; Trinajstić, Nenad ; Zhou, Bo | Comparison between the sum-connectivity index and product-connectivity index for benzenoid hydrocarbons // Chemical physics letters, 475 (2009), 1-3; 146-148. doi: 10.1016/j.cplett.2009.05.022
doiwww.sciencedirect.comdoi.org -
Amić, Dragan ; Lučić, Bono ; Kovačević, Goran ; Trinajstić, Nenad | Bond dissociation enthalpies calculated by the PM3 method confirm activity cliffs in radical scavenging of flavonoids // Molecular diversity, 13 (2009), 1; 27-36. doi: 10.1007/s11030-008-9095-7
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Lučić, Bono ; Nikolić, Sonja ; Trinajstić, Nenad | Distance-Related Molecular Descriptors // Internet electronic journal of molecular design, 7 (2008), 195-206
biochempress.com Janežič, Dušanka ; Lučić, Bono ; Miličević, Ante ; Nikolić, Sonja ; Trinajstić, Nenad ; Vukičević, Damir | Hosoya Matrices as the Numerical Realization of Graphical Matrices and Derived Structural Descriptors // Croatica chemica acta, 80 (2007), 2; 271-276
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Janežič, Dušanka ; Lučić, Bono ; Nikolić, Sonja ; Miličević, Ante ; Trinajstić, Nenad | Boiling Points of Alcohols - A Comparative QSPR Study // Internet electronic journal of molecular design, 5 (2006), 4; 192-200-x
biochempress.com Supek, Fran ; Šmuc, Tomislav ; Lučić, Bono | A prototype structure-activity relationship model based on National Cancer Institute cell line screening data // Periodicum biologorum, 107 (2005), 4; 451-455-x
Piližota, Teuta ; Lučić, Bono ; Trinajstić, Nenad | Use of variable selection in modeling the secondary structural content of proteins from their composition of amino acid residues // Journal of chemical information and computer sciences, 44 (2004), 1; 113-121-x
Lučić, Bono ; Nadramija, Damir ; Bašic, Ivan ; Trinajstić, Nenad | Toward generating simpler QSAR models: Nonlinear multivariate regression versus several neural network ensembles and some related methods // Journal of chemical information and computer sciences, 43 (2003), 4; 1094-1102-x
Lučić, Bono ; Miličević, Ante ; Nikolić, Sonja ; Trinajstić, Nenad | On variable Wiener index // Indian journal of chemistry. Sect. A: Inorganic, physical, theoretical & analytical, 42 (2003), 6; 1279-1282-x
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Amić, Dragan ; Basak S.C. ; Lučić, Bono ; Nikolić, Sonja ; Trinajstić, Nenad | Structure-water solubility modeling of aliphatic alcohols using the weighted path numbers // SAR and QSAR in environmental research, 13 (2002), 2; 281-295. doi: 10.1080/10629360290002776
doiwww.tandfonline.com -
Lučić, Bono ; Bašic, Ivan ; Nadramija, Damir ; Miličević, Ante ; Trinajstić, Nenad ; Suzuki, Takahiro ; Petrukhin, Ruslan ; Karelson, Mati ; Katritzky, Alan, R. | Correlation of liquid viscosity with molecular structure for organic compounds using different variable selection methods // ARKIVOC, (2002), 4; 45-59. doi: 10.3998/ark.5550190.0003.406
doiquod.lib.umich.edu Lučić, Bono ; Miličević, Ante ; Nikolić, Sonja ; Trinajstić, Nenad | Harary index - Twelve years later // Croatica chemica acta, 75 (2002), 4; 847-868
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Amić, Dragan ; Lučić, Bono ; Nikolić, Sonja ; Trinajstić, Nenad | Predicting inhibition of microsomal p- hydroxylation of aniline by aliphatic alcohols: a QSAR approach based on the weighted path numbers // Croatica chemica acta, 74 (2001), 2; 237-250
hrcak.srce.hr Lučić, Bono ; Istvan, Lukovits ; Nikolić, Sonja ; Nenad, Trinajstić | Distance-related indexes in the quantitative structure-property relationship modeling // Journal of chemical information and computer sciences, 41 (2001), 527-535
Lučić, Bono ; Amić, Dragan ; Trinajstić, Nenad | Nonlinear Multivariate Regression Outperforms Several Concisely Designed Neural Networks on Three QSPR Data Sets // Journal of chemical information and computer sciences, 40 (2000), 2; 403-413-x
Katritzky, A.R. ; Chen, K. ; Wang, Y. ; Karelson, M. ; Lučić, Bono ; Trinajstić, Nenad ; Suzuki, T. ; Schüürmann, G. | Prediction of liquid viscosity for organic compounds by a quantative structure-property relationship // Journal of physical organic chemistry, 13 (2000), 1; 80-86-x
Basak, S.C. ; Gute, B.D. ; Lučić, Bono ; Nikolić, Sonja ; Trinajstić, Nenad | A comparative QSAR study of benzamidines complement-inhibitory activity and benzene derivatives acute toxicity // Computers & chemistry, 24 (2000), 2; 181-191-x
Amić, Dragan ; Davidović-Amić, Dušanka ; Bešlo, Drago ; Lučić, Bono ; Trinajstić, Nenad | Prediction of pK Values, half-lives and electronic spectra of flavylium salts from molecular structure // Journal of chemical information and computer sciences, 39 (1999), 6; 967-973-x
Trinajstić, Nenad ; Nikolić, Sonja ; Lučić, Bono ; Amić, Dragan | On QSAR Modeling // Acta pharmaceutica, 46 (1996), 4; 249-263
Lučić, Bono ; Trinajstić, Nenad ; Sild, S. ; Karelson, M. ; Katritzky, A.R. | A new efficient approach for variable selection based on multiregression : prediction of gas chromatographic retention time and response factors // Journal of chemical information and computer sciences, 39 (1999), 3; 610-621-x
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Lučić, Bono ; Trinajstić, Nenad | Multivariate regression outperforms several robust architectures of neural networks in QSAR modeling // Journal of chemical information and computer sciences, 39 (1999), 1; 121-132. doi: 10.1021/ci980090f
doipubs.acs.orgpubs.acs.org Juretić, Davor ; Zucić, Damir ; Lučić, Bono ; Trinajstić, Nenad | Preference Functions for Prediction of Membrane-buried Helices in Integral Membrane Proteins // Computers & chemistry, 22 (1998), 4; 279-294-x
Amić, Dragan ; Bešlo, Drago ; Lučić, Bono ; Nikolić, Sonja ; Trinajstić, Nenad | The vertex-connectivity index revisited // Journal of chemical information and computer sciences, 38 (1998), 5; 819-822-x
Amić, Dragan ; Davidović-Amić, Dušanka ; Bešlo, Drago ; Lučić, Bono ; Trinajstić, Nenad | A simple QSAR model for trypsin aminopeptidase inhibitory flavonoids // Croatica chemica acta, 70 (1997), 4; 905-911-x
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Trinajstić, Nenad ; Nikolić, Sonja ; Lučić, Bono ; Amić, Dragan ; Mihalić, Zlatko | The detour matrix in chemistry // Journal of chemical information and computer sciences, 37 (1997), 4; 631-638. doi: 10.1021/ci960149n
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Amić, Dragan ; Davidović-Amić, Dušanka ; Bešlo, Drago ; Trinajstić, Nenad ; Lučić, Bono | The use of the ordered orthogonalized multivariate linear regression in a structure- activity study of coumarin and flavonoid derivatives as inhibitors of aldose reductase // Journal of chemical information and computer sciences, 37 (1997), 3; 581-586. doi: 10.1021/ci960158w
doipubs.acs.orgdoi.org Amić, Dragan ; Davidović-Amić, Dušanka ; Bešlo, Drago ; Lučić, Bono ; Trinajstić, Nenad | QSAR of flavylium salts as inhibitors of xanthine oxidase // Journal of chemical information and computer sciences, 38 (1998), 5; 815-818-x
Lučić, Bono ; Trinajstić, Nenad | New Development in QSPR/QSAR Modeling Based on Topological Indices // SAR and QSAR in environmental research, 5 (1997), 45-62
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Klein, D.J. ; Randić, Milan ; Babić, Darko ; Lučić, Bono ; Nikolić, Sonja ; Trinajstić, Nenad | Hierarchical Orthogonalization of Descriptors // International journal of quantum chemistry, 63 (1997), 1; 215-222. doi: 10.1002/(SICI)1097-461X(1997)63:1<215::AID-QUA22>3.0.CO;2-9
doionlinelibrary.wiley.comonlinelibrary.wiley.com
Ostalo
Juretić, Davor ; Lučić, Bono ; Trinajstić, Nenad | Why focusing on bioinformatics? // Periodicum biologorum, 107 (2005), 4; 379-383-x
Lučić, Bono ; Trinajstić, Nenad | O citiranosti hrvatskih kemičara // Polimeri : časopis za plastiku i gumu, 19 (1998), 219-219
Stručni rad
Lučić, Bono ; Trinajstić, Nenad ; Juretić, Davor | Od sekvencije do konformacije proteina. I // Polimeri : časopis za plastiku i gumu, 17 (1996), 3; 119-128
Lučić, Bono ; Trinajstić, Nenad | Citiranost hrvatskih kemičara od početka 1981. do lipnja 1997. // Kemija u industriji : časopis kemičara i tehnologa Hrvatske, 48 (1999), 33-33
Pregledni rad (znanstveni)
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Bešlo, Drago ; Golubić, Nataša ; Rastija, Vesna ; Agić, Dejan ; Karnaš, Maja ; Šubarić, Domagoj ; Lučić, Bono | Antioxidant Activity, Metabolism, and Bioavailability of Polyphenols in the Diet of Animals // Antioxidants, 12 (2023), 6; 1-27. doi: 10.3390/antiox12061141
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Juretić, Davor ; Vukičević, Damir ; Petrov, Dražen ; Novković, Mario ; Bojović, Viktor ; Lučić, Bono ; Ilić, Nada ; Tossi, Alessandro | Knowledge-based computational methods for identifying or designing novel, non-homologous antimicrobial peptides // European biophysics journal, 40 (2011), 4; 371-385. doi: 10.1007/s00249-011-0674-7
doiwww.springerlink.com Lučić, Bono ; Nikolić, Sonja ; Trinajstić, Nenad | Távolságfüggő molekuláris deszkriptorok // Magyar kémiai folyóirat, Kémiai közlemények, 114 (2008), 4; 171-175
Amić, Dragan ; Davidović-Amić, Dušanka ; Bešlo, Drago ; Rastija, Vesna ; Lučić, Bono ; Trinajstić, Nenad | SAR and QSAR of the Antioxidant Activity of Flavonoids // Current medicinal chemistry, 14 (2007), 7; 827-845-x
Prikaz, osvrt, kritika
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Lučić, Bono ; Trinajstić, Nenad | Most cited papers in Croatica Chemica Acta // Croatica chemica acta, 83 (2010), 3; 307-312
hrcak.srce.hr
Pregledni rad (stručni)
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Lučić, Bono ; Putz, Mihai V. | Laudatio for Nenad Trinajstic at his 55th Scientific Research Anniversary // International journal of chemical modeling, 6 (2014), 2-3; 167-175
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Publications - Conference journals
Izvorni znanstveni rad
Tanabe, Kazutoshi ; Lučić, Bono ; Amić, Dragan ; Suzuki, Takahiro | Carcinogenicity modelling of diverse chemicals based on substructure grouping and support vector machines // Journal of pharmacy and pharmacology, 2009. str. A65-A66
Sažetak izlaganja sa skupa
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Stepanić, Višnja ; Matić, Sara ; Lučić, Bono ; Jadrijević-Mladar Takač, Milena ; Barbarić, Monika ; Gall Trošelj, Koraljka | The effects of metabolic modifications of green tea catechins on their ADME/Tox properties including binding to human serum albumin // Biochemical pharmacology, 2017. str. 138-139. doi: 10.1016/j.bcp.2017.06.040
doiwww.sciencedirect.comdoi.org
Publications - Conference unpublished
Neobjavljeni prilog sa skupa
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Lučić, Bono | Optimization, interpretation, and selection of molecular descriptors in structure-property models // Math/Chem/Comp 2016, 28th MC2 Conference | Dubrovnik, Hrvatska, 20.06.2016-26.06.2016
www.pmf.unizg.hr Oršolić, Davor ; Lučić, Bono ; Stepanić, Višnja ; Šmuc, Tomislav | Prediction of Drug-Kinase Binding Affinities with Focus on Conserved Protein Kinase Domain // ISMB/ECCB 2021 (29th Annual Conference) | Virtual Event, 25.07.2021-30.07.2021
Lučić, Bono | Zagreb indices: an overview and development of new variants // 8th Indo-US Workshop on Mathematical Chemistry | online, 13.09.2022-17.09.2022
Lučić, Bono | Kritička analiza i pojednostavljivanje bioinformatičkih modela // HAZU 2012 simpozij Bioinformatika i biološka fizika | Zagreb, Hrvatska, 21.11.2012-21.11.2012
Publications - Graded papers
Doktorska disertacija
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Lovrić, Mario | Razvoj i primjena modela za procjenu ekotoksikološkog rizika bioaktivnih kemijskih spojeva / Lučić, Bono ; Klobučar, Göran (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2021
repozitorij.pmf.unizg.hr Bojović, Viktor | Novi parametri za procjenu složenosti klasifikacijskih varijabli i njihova primjena u modeliranju svojstava molekula / Lučić, Bono (mentor). | Osijek, Sveučilište Josipa Jurja Strossmayera u Osijeku / Sveučilište u Dubrovniku / Institut Ruđer Bošković, 2020
Batista, Jadranko | Izbor reprezentativnog skupa membranskih proteina poznate strukture: razvoj poboljšanih algoritama uporabom koncepta nasumičnog modela / Lučić, Bono (mentor). | Split, Prirodoslovno-matematički fakultet u Splitu, 2018
Nadramija, Damir | Modeliranje farmakoloških svojstava molekula s pomoću ansambla linearnih i nelinearnih multivarijatnih regresijskih modela / Lučić, Bono ; Trinajstić, Nenad (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2010
Lučić, Bono | Odnosi strukture, svojstava i aktivnosti molekula: uporaba uređeno ortogonaliziranih deskriptora / Trinajstić, Nenad (mentor). | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 1997
Diplomski rad
Nasteski, Dean | Istraživanje odnosa strukture i topljivosti organskih molekula u vodi / Trinajstić, Nenad (mentor); Lučić, Bono (neposredni voditelj) . | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2004
Močilac, Pavle | Modeliranje biološke aktivnosti molekula s pomoću 1D, 2D i 3D deskriptora / Medić-Šarić, Marica (mentor); Lučić, Bono (neposredni voditelj) . | Zagreb, Farmaceutsko-biokemijski fakultet, 2002
Piližota, Teuta | Modeliranje općih svojstava strukture proteina izborom najznačajnijih varijabli / Lučić, Bono (mentor); Supek, Selma (neposredni voditelj) . | Zagreb, Prirodoslovno-matematički fakultet, Zagreb, 2002
Magistarski rad (mr. sc. i mr. art.)
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Papeš Šokčević, Lidija | Poboljšani algoritam za izbor i provjeru kvalitete najboljih multivarijacijskih modela odnosa strukture i svojstava molekula / Šikić, Mile ; Lučić, Bono (mentor). | Zagreb, Fakultet elektrotehnike i računarstva, 2011
urn.nsk.hr
Other Publications
Popularni rad
Svetličić, Vesna ; Lučić, Bono | 3. znanstveni skup Hrvatskih biofizičara, 2003
Ostalo
Lučić, Bono | Modeliranje sekundarne strukture proteina - pregled metoda i mogućnosti poboljšanja // -., 2012
Membership in professional associations / societies
Member of IUPAC Committee on Publications and Cheminformatics Data Standards (2012-2019), former name Committee for Printed and Electronic Publications (2012- 2014)
Croatian Chemical Society
Croatian Biophysical Society
Croatian Society for Theoretical and Mathematical Biology
Croatian Cultural Society "Napredak", Sarajevo
President of the Croatian Biophysical Society (2022-)
Member of Scientific Committee of International Scientific Conference MATH/CHEM/COMP 2015-2022
Co-organizer of two home conferences of biophysicists (2003 and 2005)
Secretary of the Croatian Biophysical Society (2002-2009)
Member of the Steering Committee of the Croatian Biophysical Society (2002-2009)
Editorial work
Member of Editorial Board of Croatica Chemica Acta (2000–) and Editor (2011-) Member of Advisory Board of Internet Electronic Journal of Molecular Design (2004–2008) Member of Editorial Board of Referees of the ARKIVOC journal (2002–) Member of the Editorial Advisory Board of the Book “Quantitative Structure-Activity Relationships in Drug Design, Predictive Toxicology, and Risk Assessment”, IGI Global, 2015 Co-editor of special issue of Croatica Chemica Acta journal dedicated to Professor Douglas Jay Klein (http://hrcak.srce.hr/index.php?show=toc&id_broj=9220&lang=en), Issue 4, Volume 86, 2013. Co-editor of special issue of International Journal of Chemical Modeling dedicated to Professor Nenad Trinajstić, Issue 2-3, Volume 6, 2014. Co-editor of special issue of Croatica Chemica Acta journal dedicated to Professor Nenad Trinajstić, member of Croatian Academy of Sciences and Arts (https://hrcak.srce.hr/index.php?show=toc&id_broj=13598), Issue 4, Volume 89, 2016. |